rs31034336 SNP Detail

Summary

• ID
  rs31034336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53018796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT CCCCCTCCCT TTCGCTGCCC
  R
  CCCCCCCCTT CCTGCCCCCT TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45490384	mCV24467148	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31034336					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53018796 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43803	predicted gene 43803			within coordinates
Gm43804	predicted gene 43804			1252 bp downstream
Gm43805	predicted gene 43805			791 bp upstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr374965	regulatory region 374965			within coordinates
Rr374966	regulatory region 374966			1657 bp upstream
Rr576647	regulatory region 576647			1183 bp distal
Rr576648	regulatory region 576648			855 bp proximal