rs31039232 SNP Detail

Summary

• ID
  rs31039232
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61213188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC CTGTCGGGGT GGGCGGGGCT
  R
  TAGAGGAGGA TTTGGTTGGA CTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44989987	mCV23487478	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss146621705	ENSMUSSNP730950	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325886304	CHEV_19_61300653	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31039232					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61213188 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11146	CpG island 11146			161 bp proximal
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)			mRNA-UTR
				Noncoding-Transcript-Variant
Gm56644	predicted gene, 56644			within coordinates
Rr406075	regulatory region 406075			169 bp downstream
Rr406076	regulatory region 406076			1182 bp upstream
Rr550838	regulatory region 550838			558 bp distal
Rr550839	regulatory region 550839			609 bp distal
Tssr157374	transcription start site region 157374			310 bp downstream
Tssr157375	transcription start site region 157375			267 bp downstream
Tssr157376	transcription start site region 157376			205 bp downstream
Tssr157377	transcription start site region 157377			140 bp downstream
Tssr157378	transcription start site region 157378			66 bp downstream
Tssr157379	transcription start site region 157379			within coordinates
Tssr160090	transcription start site region 160090			144 bp upstream
Tssr160091	transcription start site region 160091			120 bp upstream
Tssr160092	transcription start site region 160092			within coordinates
Tssr160093	transcription start site region 160093			88 bp downstream
Tssr160094	transcription start site region 160094			151 bp downstream
Tssr160095	transcription start site region 160095			237 bp downstream
Tssr160096	transcription start site region 160096			658 bp downstream
Tssr160097	transcription start site region 160097			849 bp downstream
Tssr160098	transcription start site region 160098			1326 bp downstream
Tssr160099	transcription start site region 160099			1534 bp downstream
Tssr160100	transcription start site region 160100			1587 bp downstream
Tssr160101	transcription start site region 160101			1900 bp downstream