rs31039298 SNP Detail

Summary

• ID
  rs31039298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:30674260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT CTTTCTTTCT TTCTTTCTTT
  Y
  TGTTTGTTTG TTTGGAGACA GGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39247224	mCV22552399	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss139233634	ENSMUSSNP7104723	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31039298					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30674260 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6278	CpG island 6278			356 bp distal
Gm41121	predicted gene, 41121			1020 bp upstream
Nek4	NIMA (never in mitosis gene a)-related expressed kinase 4			Intron
				Noncoding-Transcript-Variant
Rr404045	regulatory region 404045			829 bp downstream
Rr489933	regulatory region 489933			1031 bp distal
Rr489934	regulatory region 489934			916 bp distal
Rr489935	regulatory region 489935			815 bp distal
Rr489936	regulatory region 489936			90 bp distal
Tssr124896	transcription start site region 124896			888 bp downstream
Tssr124897	transcription start site region 124897			853 bp downstream
Tssr124898	transcription start site region 124898			834 bp downstream
Tssr124899	transcription start site region 124899			793 bp downstream
Tssr124900	transcription start site region 124900			761 bp downstream
Tssr127906	transcription start site region 127906			1014 bp upstream