rs31039354 SNP Detail

Summary

• ID
  rs31039354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130728114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGCTTCTC ATACTCAAGG TACTTGAGCT GGACAGTTTT
  ATGTCAGCTT GACACAAGCT CGTCTTTGGA GAAGAGGGAA TCTCAATTGA GAAAATACCT
  Y
  CAAAAGATAT GGCTGTAGGC AAGCCTGTAG GGCATTTTCT TAATTAGTAA GTGATTGGAG
  AAGGGCCCAT TGTGGGTAGT GTCATCCCTG CGTTGGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45490958	mCV23363592	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135902511	ENSMUSSNP4519457	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31039354					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130728114 () rs orientation: forward

Symbol	Name	Function Class
2010110G14Rik	RIKEN cDNA 2010110G14 gene	within coordinates
Gm64594	predicted gene, 64594	within coordinates
Gm64601	predicted gene, 64601	392 bp downstream
Rr585238	regulatory region 585238	1876 bp distal
Rr585239	regulatory region 585239	902 bp proximal
Rr585240	regulatory region 585240	1912 bp proximal