rs31039572 SNP Detail

Summary

• ID
  rs31039572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69629513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCACCCTT CAGCACGCGG
  GATTTCCGGT TCTCCTATCG CGAGATCTTC GTAGGTGTGT AGCGCGGCTG AGGTAGCCGG
  TAGTGCGTCC TGGCCGGCGG GTTGCCCGCT GTGGGTGTAT TTCGCCCTGT CACGGAGCTG
  CTGGTAGGTT CTGGGTGGGA GACCCGGCTC CTGCGCCAAC AGCGGCCAGA CGAGGGAGCG
  R
  GCCGGGCCCT GTACCCGGGC TGCGAGCGGC CCGCACGGGC GCCGGGGCGT GGGTGTGGGG
  CCGAGGCCGG CCGCATGCGG AGCCGCGGCG CGGAGGAGGG CGGAAGGGCC GTGCTGGGCG
  GCGGCTCGCG ACCCCCGGGC TTGTGTGCCG CACGCATGGC TGTCCCCGAA CTCAGGAGAC
  TCGACCTGAT GGATCCAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45492037	mCV24614666	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31039572					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69629513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13262	CpG island 13262	within coordinates
Nmd3	NMD3 ribosome export adaptor	within coordinates
Rr77744	regulatory region 77744	within coordinates
Rr397719	regulatory region 397719	45 bp downstream
Tssr29546	transcription start site region 29546	109 bp downstream
Tssr29547	transcription start site region 29547	79 bp downstream