rs31039972 SNP Detail

Summary

• ID
  rs31039972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149900874 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTGT CTCAAAAAAC CAAAATAAAT
  W
  AATTAATTAA TTAAGAGGAA AATAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46472338	mCV25115081	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss134503087	ENSMUSSNP4573934	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31039972					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149900874 () rs orientation: reverse

Symbol	Name	Function Class
Rr3245	regulatory region 3245	74 bp distal
Rr9350	regulatory region 9350	667 bp distal