rs31040110 SNP Detail

Summary

• ID
  rs31040110
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165467554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTTTCTA TCATCAGTCT CGTCCGTCAC TGCTACGATA
  GATAAATGAG ATGGTCTAGT ATCTGGAATG TAGAGAGAAA AGGACAAAAC TCCTTAGCTG
  R
  CCATGGTGGC TCACACTTGT AATAGCAGTG TGCAGGAGAA CAAGGCCAGT GTGGCTGCAA
  AGGTCTGAGG ATGTTCTAAG TTCCAGCGGG CTGCCCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44989396	mCV23519243	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss49735464	NES13055363	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	G	A	G	G	A	G
ss146003976	ENSMUSSNP3845341	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31040110					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735464	NES13055363	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165467554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	1837 bp proximal
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	1649 bp upstream
Rr396497	regulatory region 396497	1393 bp upstream
Rr422408	regulatory region 422408	1578 bp proximal
Rr422409	regulatory region 422409	1672 bp proximal