rs31040459 SNP Detail

Summary

• ID
  rs31040459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152100034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAGAGT TCTAGGATGT
  ATACACACAC ACACACACAC ACACACACAC ACACACGGAT GGAGGGAAGG GCAGGGAGAG
  TATTGTAGAT CAGCCTTGAC TATAGAAGCT TGCCTCAGCG AAAACAAGCT TCAAATCGCA
  ATGCCTGTTT TGCCAACAAA TGTTAGCAAG GCCATGGGTT GGGTTTCTCT CTTATGTTTA
  Y
  ATATTAGTGC CGGGTGGTGG TGGTGCACGC CTTTACTCCC AGCACTCGGG AGGCAGAGGC
  AGGCAGATTT TTGATTTTGA GGCCAGCCTG GTCTACAAAG TGAGTTCCAG GCCAGCATGG
  GCTACACAGA GAAACCCTCT CTCGAAAAAC CAACAAAACA AAACGTTTGC GTATTAGTGC
  GGTGGTACCA TTCCCACGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45491245	mCV23507496	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136102878	ENSMUSSNP4672711	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31040459					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152100034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	170 bp proximal
Cpgi13950	CpG island 13950	898 bp proximal
Gm43857	predicted gene 43857	157 bp upstream
Gm66519	predicted gene, 66519	within coordinates
Tssr32410	transcription start site region 32410	1047 bp upstream
Tssr32411	transcription start site region 32411	1594 bp upstream
Tssr32412	transcription start site region 32412	1664 bp upstream
Tssr32413	transcription start site region 32413	1965 bp upstream
Usp33	ubiquitin specific peptidase 33	780 bp downstream
Zzz3	zinc finger, ZZ domain containing 3	1076 bp upstream