rs31040616 SNP Detail

Summary

• ID
  rs31040616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:18293148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTGAAG TTTTAAAAAA
  ACTGAGTAGA AGTAATTACA CTATTTTTTG CATAAACAAG AAAAATAGTT GTCCTATCTT
  AAGTTGTCTG AAATATGTCA AGACTATCTG TTCACTCTTC TCCATGAAAA TGTTTCCTTG
  TTGAAACTAA TCTAAAGTCA GACTAATGAA ATTAATGGGA TAGAAAGGAG AGCACACCGT
  Y
  CAACCCATGA AGCTCAAGAC AGTAAATTTG TCTTCTGTTT CTCCTGTAGT AGGCAACAAA
  GGAGACATTC TTTCTATAAA AGGAGATGTT ATCTGCTTTC AGGTATTTTC AATATAATTT
  AAAAATAATC ATAATACCAA GTTAAAATTC CTTACTATTT ACTCTCACTT GCTTTATACA
  CGTTACTTAT TTCATATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44990092	mCV23154387	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss60702810	NES16337143	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T		C		T	T	C	T	T	C	C
ss148689414	ENSMUSSNP4088239	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31040616					SNP	C	T	T	T	C	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60702810	NES16337143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:18293148 () rs orientation: forward

Symbol	Name	Function Class
Defb44-ps	defensin beta 44, pseudogene	within coordinates
Gm71262	predicted gene, 71262	within coordinates
Tssr11066	transcription start site region 11066	646 bp downstream
Tssr11067	transcription start site region 11067	679 bp downstream