rs31041499 SNP Detail

Summary

• ID
  rs31041499
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47120927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC CGTGATACGG GCTCCCGCGG
  K
  CCCTGCGTAA GGCGTGCGCC CCCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss39248625	mCV24826493	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss139393591	ENSMUSSNP7071173	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss324592432	CHEV_14_47503145	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs31041499					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47120927 () rs orientation: forward

Symbol	Name	Function Class
2810457G06Rik	RIKEN cDNA 2810457G06 gene	228 bp downstream
Cpgi6376	CpG island 6376	within coordinates
Gm34934	predicted gene, 34934	752 bp upstream
Rr297079	regulatory region 297079	within coordinates
Samd4	sterile alpha motif domain containing 4	within coordinates
Tssr4382	transcription start site region 4382	560 bp upstream
Tssr125240	transcription start site region 125240	534 bp downstream
Tssr125241	transcription start site region 125241	497 bp downstream
Tssr125242	transcription start site region 125242	471 bp downstream
Tssr125243	transcription start site region 125243	1106 bp upstream
Tssr128301	transcription start site region 128301	1517 bp downstream