rs31041559 SNP Detail

Summary

• ID
  rs31041559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12739493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAT GAAATAAGCC TTTCTAACTT
  Y
  GTAGAAAAAT AACTATCTAT ACCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss44989519	mCV23019062	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146065386	ENSMUSSNP5340982	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31041559					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12739493 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	1531 bp downstream
Gm44505	predicted readthrough transcript (NMD candidate), 44505	1531 bp downstream
Rr356731	regulatory region 356731	108 bp proximal
Rr359681	regulatory region 359681	1893 bp distal
Rr361368	regulatory region 361368	185 bp proximal