rs31041641 SNP Detail

Summary

• ID
  rs31041641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19296837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA AGCCAAGTAC TGGGAGCAGG
  R
  TAAAGTGATG GAGGTGCTGA GAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45990215	mCV25052537	ABI	CRAMUS_MOUSE	f	SNP	G	A			A
ss48163336	NES11822734	PERLEGEN	MM_PANEL2	f	SNP		A	A	G		G	A		G	A	G	G
ss148478850	ENSMUSSNP2612668	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322117458	CHEV_7_20148261	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31041641					SNP	G	A	A	G	A	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163336	NES11822734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19296837 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18499	CpG island 18499			103 bp distal
Ppp1r37	protein phosphatase 1, regulatory subunit 37			mRNA-UTR
				Noncoding-Transcript-Variant
Rr643188	regulatory region 643188			405 bp distal
Rr643189	regulatory region 643189			154 bp proximal
Rr643190	regulatory region 643190			1655 bp proximal
Rr643191	regulatory region 643191			1739 bp proximal
Tssr70928	transcription start site region 70928			746 bp upstream
Tssr70929	transcription start site region 70929			715 bp upstream
Tssr70930	transcription start site region 70930			664 bp upstream
Tssr70931	transcription start site region 70931			511 bp upstream
Tssr70932	transcription start site region 70932			475 bp upstream