rs31042098 SNP Detail

Summary

• ID
  rs31042098
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135763679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGAAGGAG GCTACTTCTG TGAGGATGAC
  ATAGTGTGTG GCCTTGGGGC TCATGGAGAA GACTAGATAC CCTCACCAAG GCCTGCAGAG
  CCATCTATCT GCCTGAGGCC ATTTGGCTCA TGAGAAGCAG CCAGCAGCCC AGAGGACGTC
  W
  TTACCCCCAG CCTCATTTCC AACAGTGTTC TTGTCCTTTG TTCCCTAGGA CCTGGCTCAG
  AGGCTCGTGA AGTGTCTCTG AGGTTGACTT CTGCCCTCAA CTCTGCTCCC AGCTTGCTCT
  TCTGGGCCTG GGCTCCTGGC ATCTGCTTTA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44990216	mCV24740873	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	T
ss145547963	ENSMUSSNP2094613	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
ss319993822	CHEV_1_137732518	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31042098					SNP	T	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135763679 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1078 bp distal
Rr419293	regulatory region 419293	1514 bp distal
Rr419294	regulatory region 419294	within coordinates
Rr419295	regulatory region 419295	483 bp proximal
Rr419296	regulatory region 419296	951 bp proximal
Rr419297	regulatory region 419297	1808 bp proximal
Tnnt2	troponin T2, cardiac	413 bp upstream
Tssr9005	transcription start site region 9005	439 bp upstream