rs31042135 SNP Detail

Summary

• ID
  rs31042135
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135799856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT ATATGGAGGG GCAGGGGTAC
  K
  GTAGGTTTGA TTTCCTGTTA TTGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44989324	mCV23238878	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss319993924	CHEV_1_137768695	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31042135					SNP	G	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135799856 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	1968 bp downstream
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	1257 bp upstream
Tssr13903	transcription start site region 13903	229 bp upstream