rs31042337 SNP Detail

Summary

• ID
  rs31042337
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94442394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAACCATC TGTAATAGGA TCTGATGCCC TCTTCTGGTG
  TGTCTAAAGA CAAGTACACT GTACTCATAT AAATAAAATA AGTAAATCTT AAAAAAAAAA
  M
  AAACCCAGAT AGTGGAAAAT CTCCTGAGAT GTCTTCAGAC CTCCATACAC ATCCACAATA
  AACAAACAAA TAACAGGAAG TAAGTAAATA TAAATAAAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45491265	mCV23092058	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss135505855	ENSMUSSNP6493661	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320840304	CHEV_3_94339009	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31042337					SNP	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94442394 () rs orientation: forward

Symbol	Name	Function Class
Gm43773	predicted gene 43773	within coordinates
Gm43774	predicted gene 43774	1524 bp downstream
Rr375397	regulatory region 375397	1086 bp upstream
Rr580647	regulatory region 580647	665 bp distal
Rr580648	regulatory region 580648	920 bp distal
Snx27	sorting nexin family member 27	Intron