rs31042625 SNP Detail

Summary

• ID
  rs31042625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:85879671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACCGTAA TGGAGAGGAA
  ATTATTAGGC CAGCTGGTTA ACCACAGTTA TCTGAAACTG GATGGAAGAA TTAACCTAGA
  AGATGCATAA AGAGGTGAAG GGATTGGGAA GAGTCATGGG AAATCCAGGC ACCAGACTGG
  AGCCTTCTTA GAAAGGGAAC ATGGAGAGGC TCCTCTGTGT GACCACCAGG AGAAAGTTGG
  R
  TCTGTGGAAT TGGAGGGCAG AAAATGGGAT AAAAGCAAAA AAAAAAAAAA AAAAAAAAAG
  TCGGTAAGCG TATTCCGAGT AAGACATTCC GGAAGCTTAA AATTAACTTT ATGCCTGCCT
  GCCTGCCTGC CACGGGGCCT TTTTTAGAGT AAGACACTTG ACTGTTACCA TGAACACCAA
  GTGATAATAA TCGGTAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45492066	mCV22810440	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		G
ss46728641	NES10744721	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	G	G		G	G	A	G		A
ss320828561	CHEV_3_85776286	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31042625					SNP	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46728641	NES10744721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:85879671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13322	CpG island 13322	456 bp distal
Rr579285	regulatory region 579285	1245 bp distal
Rr579286	regulatory region 579286	within coordinates
Rr579287	regulatory region 579287	1089 bp proximal
Sh3d19	SH3 domain protein D19	within coordinates
Tssr29770	transcription start site region 29770	1189 bp downstream
Tssr29771	transcription start site region 29771	1128 bp downstream