rs31043916 SNP Detail

Summary

• ID
  rs31043916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185871443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTTATAC ATATCAAACA TTCCATCATA TCTCAGTAAC
  ATCACCACGA GGACTAAGTC TGTGGCAGAT GGAACTCTGG GAGACAGATA AGACCCTGAT
  R
  TATGGGAGAA AAACAAGCGA ATGGGTCATA GTCCTTCCTA TTCCAAGAGG ATGAAGAAAA
  GCAGTTGTCA GCCTTGGGCC TGGCTGTCCT TCTAGTCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44989834	mCV24949326	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		A
ss46740997	NES10649898	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		G		G	A		G	G	A	A		G
ss146452429	ENSMUSSNP1653539	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss320182239	CHEV_1_187963125	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31043916					SNP	A	A	G	A	G	A	G	G	G	A	G	A	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740997	NES10649898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185871443 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	1910 bp distal
Rr425454	regulatory region 425454	881 bp distal
Tssr10623	transcription start site region 10623	1275 bp downstream