rs31046399 SNP Detail

Summary

• ID
  rs31046399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66473464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGATTG GGACTGTACT
  GAGGTTCCCT CATCCCAAGC AGCACCCTGG CTCTGACATC TTGTGGTCTT AGCTAAGCTT
  AGAATTGAGA AGCCTGGCAG AGACCTAATG CTGCTGTCTT CTTGCTGTCC CAGGCAGCTG
  TTAATGTCAC TGTTAGGAGC ATTTCTGACC TCCTATTTTC CTAAGGTTTA AGGACTCCTA
  Y
  AGACAGAGAC ACTTGGGCAT GCTCCCTCCA GCTTAACCCA ACCCCAAGGA ATATGGGTAA
  AGCATTGAGT TTGGCTCTGC TCTACAATTA GCCATGTTTT TTGTTTGTTT CTTTCTTTTT
  TGTTTTTGTT TTTGTTGTTG TTGTTGTTGT TGTTTTTGGT TTTGGTTTTT GTTTGTTTGT
  TTGTTGCCCA GGCTAGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss49198140	NES12504427	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs31046399					SNP	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49198140	NES12504427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66473464 () rs orientation: forward

Symbol	Name	Function Class
Gm52099	predicted gene, 52099	907 bp downstream
Ptk2b	PTK2 protein tyrosine kinase 2 beta	within coordinates
Rr299984	regulatory region 299984	within coordinates
Tssr129300	transcription start site region 129300	458 bp upstream
Tssr129301	transcription start site region 129301	431 bp upstream
Tssr129302	transcription start site region 129302	406 bp upstream
Tssr129303	transcription start site region 129303	335 bp upstream
Tssr129304	transcription start site region 129304	273 bp downstream
Tssr129305	transcription start site region 129305	349 bp downstream