rs31046450 SNP Detail

Summary

• ID
  rs31046450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116388342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT TTCCCCGCGG CCGCCACCAT
  Y
  CTGCAGAAGC GCTTCTTCTT TTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45492562	mCV23695451	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss135670253	ENSMUSSNP526435	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320895811	CHEV_3_116297611	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31046450					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116388342 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	within coordinates
Rr397965	regulatory region 397965	70 bp upstream
Rr583746	regulatory region 583746	222 bp distal
Rr583747	regulatory region 583747	54 bp proximal
Rr583748	regulatory region 583748	135 bp proximal
Rr583749	regulatory region 583749	328 bp proximal
Rr583750	regulatory region 583750	496 bp proximal
Sass6	SAS-6 centriolar assembly protein	289 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	266 bp upstream
Tssr35316	transcription start site region 35316	123 bp downstream
Tssr35317	transcription start site region 35317	155 bp downstream