rs31047391 SNP Detail

Summary

• ID
  rs31047391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66472528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTCTCT CTCCTTGTCT
  GTCCCTGCCC TCCTCTGCCT CTGTGGTGCA GTGGTAACAA TTTACCCCCT TGGACCAGCC
  CTGACTAAAT CAGAACACTA TAGAATTCAG CACTAGATAG GGTTTCAGAG ATCATCCACT
  CTGCTGTTTT TTCTAGAACT TGCAAGATCC TTGGGGAAAG TCGTTAAAAA AACACATGGC
  Y
  TACTTACCGA GCTGAACAAA GGATTTTGAA ACAGGTAGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTAGTTATG CATGTACATA TATAGAGAGA GAATTGGGGA AAAGAGAGAT
  AAATTCAAAG TACCTAGAGG TTGATACAGC CTCAGGACTG TCACAGCAGA CACCATGTGA
  CCTCTAAAAG GACAAAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49198152	NES12504421	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31047391					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49198152	NES12504421	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66472528 () rs orientation: forward

Symbol	Name	Function Class
Gm52099	predicted gene, 52099	within coordinates
Ptk2b	PTK2 protein tyrosine kinase 2 beta	within coordinates
Rr299984	regulatory region 299984	within coordinates
Tssr129300	transcription start site region 129300	464 bp downstream
Tssr129301	transcription start site region 129301	484 bp downstream
Tssr129302	transcription start site region 129302	508 bp downstream
Tssr129303	transcription start site region 129303	588 bp downstream
Tssr129304	transcription start site region 129304	1209 bp downstream
Tssr129305	transcription start site region 129305	1285 bp downstream