rs31047393 SNP Detail

Summary

• ID
  rs31047393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66471969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGCTCCT GTGAGATGCT
  GAGTCCATTC TGAGTTCTGT CCCCTGCTCA TCCTTCAGCT AAGGTGGCAT CCCCAGACTC
  TTTTTATCTC CACAGTACTG GCTGAGCAGA TTCCCCTCCC ACTCTTGGGT TCTATTCTCA
  GCTGTCAACA TTGCCAGCTC TCGTCAAGTG TCTCGATGTA TGGCTAAGCG CCAGGTAAAG
  W
  AAAGAAGAAT CTAGAACACA GCCTGCCCTG CTCACTGCAT AACCCACAGC CCTTCTTGCA
  TGGCTGAGCG CCAGGTAAGG AAAGGAAGAA TCTAGAACAC AGCCTGCCCT GCTCACTACA
  TAGCCACAGC CCTACTGGCA ACAAGCAGGT TATATGGGTA GAACACTAAA CCGAACATGA
  ATGGGCACTG TGATACTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49198154	NES12504483	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31047393					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49198154	NES12504483	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66471969 () rs orientation: forward

Symbol	Name	Function Class
Gm52099	predicted gene, 52099	within coordinates
Ptk2b	PTK2 protein tyrosine kinase 2 beta	within coordinates
Rr299984	regulatory region 299984	within coordinates
Tssr129300	transcription start site region 129300	1023 bp downstream
Tssr129301	transcription start site region 129301	1043 bp downstream
Tssr129302	transcription start site region 129302	1067 bp downstream
Tssr129303	transcription start site region 129303	1147 bp downstream
Tssr129304	transcription start site region 129304	1768 bp downstream
Tssr129305	transcription start site region 129305	1844 bp downstream