rs31048173 SNP Detail

Summary

• ID
  rs31048173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99770396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGC GCGCGCCAGA AGCTCTGCCC
  R
  CAGGGCGTGT CTCCCTACGC GGGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45991494	mCV23563829	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				G	G
ss47078460	NES11627278	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	G			A	A		G	A	A		A
ss145524285	ENSMUSSNP2494129	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
ss322348211	CHEV_7_107269699	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31048173					SNP	A	A	A	A	A	G	G	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47078460	NES11627278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99770396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	within coordinates
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	within coordinates
Rr400466	regulatory region 400466	241 bp upstream
Rr652064	regulatory region 652064	within coordinates
Rr652065	regulatory region 652065	267 bp proximal
Tssr73730	transcription start site region 73730	640 bp upstream
Tssr73731	transcription start site region 73731	95 bp upstream
Tssr73732	transcription start site region 73732	243 bp downstream
Tssr73733	transcription start site region 73733	257 bp downstream
Tssr73734	transcription start site region 73734	323 bp downstream