rs31048398 SNP Detail

Summary

• ID
  rs31048398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66471602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGCCAC GAGCGTCACT
  CAGGCTTTGC TGTCAGTGAT CTACTGTTTT AACACAACCT TGTAGTGAAG GTCTGAAGTA
  TTCACGCACC CTTCCATGAC AAGGTCACCT ACTATTCACA TACATTTCAC TCCCATCTCA
  AGAAGTCTAT AATAATCAAA ATGAGCAAGG TTGTTAAAAA CTAGGGGTGA TAAGCAGAAA
  Y
  TTTGAAAGCT AGTCCCAGAT AGTCACCAAG CCAGTGGTCC TATCCATATT TTCTGGGTGT
  AAACCTAGTC TCTGCTTTCT GGGTTTAGGT CTTGGATACT TAGAATTTTG GAGTATAATA
  AGCTCTGAGG GTCATACATC CTTTTCCATG GCCTTAAAGC TCAACCATTG GCTCCTGTGA
  GATGCTGAGT CCATTCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49198160	NES12504480	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31048398					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49198160	NES12504480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66471602 () rs orientation: forward

Symbol	Name	Function Class
Gm52099	predicted gene, 52099	within coordinates
Gm63521	predicted gene, 63521	1736 bp upstream
Ptk2b	PTK2 protein tyrosine kinase 2 beta	within coordinates
Rr299984	regulatory region 299984	within coordinates
Tssr129296	transcription start site region 129296	1884 bp upstream
Tssr129297	transcription start site region 129297	1831 bp upstream
Tssr129298	transcription start site region 129298	1793 bp upstream
Tssr129299	transcription start site region 129299	1734 bp upstream
Tssr129300	transcription start site region 129300	1390 bp downstream
Tssr129301	transcription start site region 129301	1410 bp downstream
Tssr129302	transcription start site region 129302	1434 bp downstream
Tssr129303	transcription start site region 129303	1514 bp downstream