rs31048958 SNP Detail

Summary

• ID
  rs31048958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCCCCTCC CCCCCCCCCC CCCCGTTACT GATCTTCTGA
  GGGGGTGAAG GGTGGGGCAA GTGAGCCGGG AATCTGGGGG AAAGGACAAG TGAGTCCCGA
  Y
  GGGCTGTAAT GTTCCTAGGG TTGCATATGG TGATGCTGCA TCTTCAAGAG GGATCCTGTG
  ATTTGATGAA GGGGGTCTTG GGCACTCTAA ACGAGGGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45990972	mCV25394721	ABI	CRAMUS_MOUSE	f	SNP			C					T
ss60990786	NES16136663	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	T	C	C		T	C	T	C		C
ss148682336	ENSMUSSNP5805130	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss322135217	CHEV_7_31338817	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31048958					SNP	C	C	C	C	C	T	C	T	C	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990786	NES16136663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253223 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hspb6	heat shock protein, alpha-crystallin-related, B6			Intron
				Noncoding-Transcript-Variant
Lin37	lin-37 DREAM MuvB core complex component			1643 bp downstream
Mir9769	microRNA 9769			894 bp downstream
Proser3	proline and serine rich 3			1499 bp upstream
Rr400242	regulatory region 400242			1306 bp downstream
Rr644846	regulatory region 644846			1542 bp distal
Rr644848	regulatory region 644848			1036 bp distal
Rr644849	regulatory region 644849			520 bp distal
Rr644850	regulatory region 644850			297 bp distal
Tssr65779	transcription start site region 65779			1234 bp downstream
Tssr65780	transcription start site region 65780			526 bp downstream
Tssr65781	transcription start site region 65781			489 bp downstream
Tssr65782	transcription start site region 65782			974 bp upstream
Tssr65783	transcription start site region 65783			1049 bp upstream
Tssr65784	transcription start site region 65784			1073 bp upstream
Tssr65785	transcription start site region 65785			1125 bp upstream
Tssr65786	transcription start site region 65786			1143 bp upstream
Tssr65787	transcription start site region 65787			1237 bp upstream
Tssr71787	transcription start site region 71787			1482 bp upstream
Tssr71788	transcription start site region 71788			1423 bp upstream
Tssr71789	transcription start site region 71789			867 bp downstream
Tssr71790	transcription start site region 71790			979 bp downstream