rs31049009 SNP Detail

Summary

• ID
  rs31049009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5652209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC TGGCCTGATG GCTTTGCATG
  Y
  CCCTCCTGCA GGGCTACAGG CGTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44991784	mCV25320522	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss146012750	ENSMUSSNP5280913	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss325717125	CHEV_19_5602181	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31049009					SNP	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5652209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	within coordinates
Kat5	K(lysine) acetyltransferase 5	833 bp downstream
Rnaseh2c	ribonuclease H2, subunit C	within coordinates
Rr363585	regulatory region 363585	within coordinates
Rr370434	regulatory region 370434	222 bp downstream
Tssr154457	transcription start site region 154457	329 bp downstream
Tssr154458	transcription start site region 154458	265 bp downstream