rs31049136 SNP Detail

Summary

• ID
  rs31049136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128063941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGCCTCT ACTCTCAGAA
  CTGCTGGTCC GTGTTCAACA ACCGACGCCT CACGCGACGG GCAAAAGAGT GGCAACTCTG
  AACCCGGAGA GATGTAGCGG ACATCGGGCA ACACCAGATC CAGCCTTGTC TTTGAGCACG
  TGTTCTAACC AGATAGGCCT TTCTAGACTA TACCGCTTGT AACTTGCTTT ACAAGTTCCA
  Y
  AAGGATCGCT ACCCATTATC TCATCGGATT AGTGGGTAAG GCTGCAAAAG AGCAGCCCCT
  CATTCAAATG GCTTGTACCG CTCTTTCAAA TCCCTACTTA AAACTTAAAT ATTCGCGTGG
  TGGCGCACAG TGCTACTGAA CAGGAGGATA ATGGATTTAA GGCCAGCCTA GAAATAGATA
  CCAAGACCTT ATCAAAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45991217	mCV24293245	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss61060894	NES16065833	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	T	T	C	C	C	C
ss145891479	ENSMUSSNP972844	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31049136					SNP	T	T	C	C	C	T	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060894	NES16065833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128063941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	within coordinates
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	280 bp downstream
Rr656041	regulatory region 656041	1231 bp distal
Rr656042	regulatory region 656042	128 bp distal
Rr656043	regulatory region 656043	within coordinates
Rr656044	regulatory region 656044	109 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	500 bp upstream
Tssr2414	transcription start site region 2414	1022 bp upstream
Tssr69425	transcription start site region 69425	243 bp downstream
Tssr75110	transcription start site region 75110	1040 bp upstream
Tssr75111	transcription start site region 75111	891 bp upstream
Tssr75112	transcription start site region 75112	830 bp upstream
Tssr75113	transcription start site region 75113	817 bp upstream
Tssr75114	transcription start site region 75114	657 bp upstream
Tssr75115	transcription start site region 75115	595 bp upstream
Tssr75116	transcription start site region 75116	555 bp upstream