rs31049442 SNP Detail

Summary

• ID
  rs31049442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79992565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT TTCAGATTAT TGCAATAGCC
  R
  GGTAAAAAAG CTGGGGATGG CAACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45992003	mCV22750427	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145142272	ENSMUSSNP2033994	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322281161	CHEV_7_87487703	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31049442					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79992565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19332	CpG island 19332	66 bp proximal
Hddc3	HD domain containing 3	287 bp upstream
Rr400404	regulatory region 400404	126 bp upstream
Rr649872	regulatory region 649872	1780 bp distal
Rr649873	regulatory region 649873	within coordinates
Rr649874	regulatory region 649874	250 bp proximal
Tssr67435	transcription start site region 67435	274 bp upstream
Tssr67436	transcription start site region 67436	348 bp upstream
Unc45a	unc-45 myosin chaperone A	1817 bp upstream