rs31049611 SNP Detail

Summary

• ID
  rs31049611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126576457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTCCCAA CATCCTCTGT
  CCTTTCCCTG CTTTCTCAGA ACCTCGTTGA GAGCTGCCTA GGATATAAGC TTGCTCTTGA
  TGATTGATCT CTGTTTGGGA TGGGTGTGGA AGACCTAGAC CCTGCATAGC TGTGAGCATG
  GAATTCCATT CGGGTGTGGC ATAATGGCTC ATGCTTGTAA TGCCAGCACT GATAAGGTAG
  R
  TAGATTGCTC CAAGTCAGAA GTCATATTGA GTACCACGTG AGCCAGGACT ACACAGTAAA
  ATCCTGCAAA AATAAGTGAT TGGGGCTGAA GGCTAAGTTT GTTCTCAGAG GTTAAGACTG
  CTTACTGCTG CCTGGCGGTG GTGGCGCACG CCTTTAATCC CAGCACTTGG GAGGCAGAGG
  CAGGCAGATT TCTGAGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45991406	mCV25212430	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss145877137	ENSMUSSNP6897845	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31049611					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126576457 () rs orientation: forward

Symbol	Name	Function Class
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	Intron
Cdiptos	CDIP transferase, opposite strand	882 bp upstream
Cpgi19724	CpG island 19724	241 bp distal
Rr368439	regulatory region 368439	976 bp downstream
Rr655656	regulatory region 655656	1508 bp distal
Rr655657	regulatory region 655657	422 bp distal
Tssr2401	transcription start site region 2401	687 bp downstream
Tssr69141	transcription start site region 69141	1661 bp downstream
Tssr69142	transcription start site region 69142	988 bp downstream
Tssr69143	transcription start site region 69143	885 bp downstream
Tssr69144	transcription start site region 69144	863 bp downstream
Tssr69145	transcription start site region 69145	819 bp downstream
Tssr69146	transcription start site region 69146	741 bp downstream
Tssr69147	transcription start site region 69147	708 bp downstream
Tssr69148	transcription start site region 69148	666 bp downstream
Tssr69149	transcription start site region 69149	1748 bp upstream
Tssr74865	transcription start site region 74865	1869 bp upstream
Tssr74866	transcription start site region 74866	1442 bp upstream
Tssr74867	transcription start site region 74867	1438 bp upstream
Tssr74868	transcription start site region 74868	1180 bp upstream
Tssr74869	transcription start site region 74869	1154 bp upstream
Tssr74870	transcription start site region 74870	1143 bp upstream