rs31049629 SNP Detail

Summary

• ID
  rs31049629
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34973989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACTCCCCA AGATGTAAAA GGGTGCATGG GACTGGGAAT
  GTAGAGATTA AGGTGGCAGG CGACTCAGCC AGCCTCGGGC ATCCATCACT AATGCCCCCC
  M
  GGGGCTGCAC ATGCTTCTGC GCCTGTGGGA GGGTGCAGAG CGGATGACGG GTCTCACTCA
  GGTGGCTGGA AGGCCACTTG GGTCCTCTGA CATTGGTAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45992100	mCV23209390	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss148806138	ENSMUSSNP4899024	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss322156831	CHEV_7_36059583	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31049629					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34973989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18867	CpG island 18867	373 bp proximal
Cpgi18868	CpG island 18868	952 bp proximal
Gm73037	predicted gene, 73037	within coordinates
Gpatch1	G patch domain containing 1	1980 bp downstream
Rr645353	regulatory region 645353	1322 bp distal
Tssr72028	transcription start site region 72028	966 bp downstream
Tssr72029	transcription start site region 72029	982 bp downstream
Wdr88	WD repeat domain 88	within coordinates