rs31049896 SNP Detail

Summary

• ID
  rs31049896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11172118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGGAGT GTGTGTGGGA
  CTTTTGGGAT AGCATTGGAA ATGTAAATGA AATAAATACC TAATTTAAAA AAAGTATGTT
  TGCATTGCTT AATTGCTTAA GATGTTCAAT TTAATTGCTG GAAGAAAAAA GTATACTAAT
  GAAATAACTT GTCAGAATTC TCTTAAAAAA CAACTATATT TGACTACTCT GCAATCCAAT
  Y
  AAAAATCCAA ATTTTGTATA AATAAATAAA TAAATATTAT TTGTTTTTAT TTTCTGGTGA
  TTCCATTGTT AATCTAGAAG TAGGTGAAAG ACAAGTCACC TAGTTGTTAT ACCTAGACCA
  ACTGTCACAT GCTAAAACTT GCACAGATAT TCTGGAACAC TCAGAGAGAG ACCATGTCTA
  TTATTTATCC TGAGCATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44990677	mCV25122750	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss50597180	NES13640054	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		T	T	T	T	T	T	T	T	T
ss146048769	ENSMUSSNP5006854	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31049896					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50597180	NES13640054	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11172118 () rs orientation: forward

Symbol	Name	Function Class
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	1930 bp downstream
Tssr158300	transcription start site region 158300	1946 bp downstream