rs31050269 SNP Detail

Summary

• ID
  rs31050269
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18916461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCACCTA TAGCCTGGAC
  ACTCGTTCTG AGCTGCCCTC CAGCCGGCTA AAGCTAGACT GGGTGTATCC TTTGACTAGC
  TCCCTTTCTG CCCTCTTGGA AGAGGGTAAG TCCTGGTACG GAGAGGGAGG CGCAGGGCAG
  GGCTACAGCT GGGCTTTCTC AGGCCACAGT GGGGGAAGTG GGGGGTCGGA AGGTGAAGGG
  W
  GTCCAGAGGG AAACAGAGTA GCTAGAATGA CTCACCTGCT GTGAGTGACT CATTCAGGGA
  ATGTTTGAAG CGGAATGTTT AACTCAAGGA TGATCTTGAG AACTTGGTCT TCCTGCCTGC
  ACCTTCAAGG GCTTGGATTA CAGGATTTTG TGCACCACCA CATCTGGCTC TCATGGATAT
  CAGTCAGACA GTGTAAACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45992110	mCV22832403	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss148469655	ENSMUSSNP2014664	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31050269					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18916461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18453	CpG island 18453	963 bp distal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	974 bp downstream
Rr643020	regulatory region 643020	1322 bp distal
Rr643021	regulatory region 643021	928 bp distal
Rr643022	regulatory region 643022	1790 bp proximal
Tssr64797	transcription start site region 64797	1334 bp downstream
Tssr64798	transcription start site region 64798	1315 bp downstream
Tssr64799	transcription start site region 64799	1211 bp downstream
Tssr64800	transcription start site region 64800	1079 bp downstream