rs31050536 SNP Detail

Summary

• ID
  rs31050536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43085477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGACATTT GGTGATCTAA TAAAACTGAT GTGAAACTGT
  CAAAGTGTGC TTCTTCAAAG GGCTGGTTTG GTAAGAATCG GACTGGGGCA GGGCGGGGCA
  R
  GAAGGTTTGA TATGGTAGCC TCATTCTTCC ATTATCAGGG ATGAGAACAA GACAAATGGC
  TCCTTACCTA GGAGATAGCC ATGGTTTAAT GTCTAGAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45992207	mCV22666164	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss149072650	ENSMUSSNP4987138	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31050536					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43085477 () rs orientation: forward

Symbol	Name	Function Class
Gm52993	predicted gene, 52993	62 bp downstream
Lim2	lens intrinsic membrane protein 2	57 bp downstream
Nkg7	natural killer cell group 7 sequence	1085 bp upstream
Tssr2210	transcription start site region 2210	955 bp upstream
Tssr65999	transcription start site region 65999	913 bp upstream
Tssr66000	transcription start site region 66000	1079 bp upstream
Tssr66001	transcription start site region 66001	1533 bp upstream
Tssr66002	transcription start site region 66002	1547 bp upstream