rs31050581 SNP Detail

Summary

• ID
  rs31050581
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10184394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTAGAGGCT AGAGGCGATT GGCCTAAGTA CTGTGGGCTG
  CTTTTCCTCG TGGATGTCAG AGATACGGTG TGGAGCACCA GAGTCCATGC CATTTCTTGG
  W
  CCCCTCTGCC TGGCTGCATC AAGCTAGACA AGCCTCCCAG GAATCCCTTA GCCTGTTCTT
  CCCCATGAAA GGTAGTCAGA GACAGCTCCT GCACTGTAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44991806	mCV23259584	ABI	CRAMUS_MOUSE	f	SNP	T	T	A					T
ss50603756	NES13643206	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T	A		T	A	T	A		T	T	T	T		A
ss146041414	ENSMUSSNP1797757	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
ss325720150	CHEV_19_10281520	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31050581					SNP	T	T	A	T	A	T	A	T	T	A	T	A	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50603756	NES13643206	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10184394 () rs orientation: forward

Symbol	Name	Function Class
Myrf	myelin regulatory factor	1242 bp downstream
Rr356596	regulatory region 356596	394 bp distal
Rr361277	regulatory region 361277	451 bp proximal
Rr362959	regulatory region 362959	1593 bp distal
Rr363809	regulatory region 363809	1807 bp proximal
Tmem258	transmembrane protein 258	within coordinates
Tssr155040	transcription start site region 155040	551 bp downstream