rs31050974 SNP Detail

Summary

• ID
  rs31050974
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127399680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATTATG TCAAGATCAG
  GTTTACCCTG CTCTCCCTCC CAGAACCATA GCTGGTGCTG GGCCTTCAGC CTACTGGGAG
  ACCCAGCAGG AGGGACAAAC ATATCAGTGA TGGGGGCATC CCTTCCCTAC CCTATTATCC
  TGAAATACAC TACCAAATGG GCAGGTTCTG TCCTTTGCCT GCCACTGAAG AGTGGACTGG
  M
  CACCAGGGGG CACTCTGGCA AGAAAATTCC CTCCAAACCC CCTTGCCCGC CCCTAGGGGT
  GGAGGCTAGG CTGGTCTCCT TCCTGGAATG GGTCAGGAGG GAGGAGCGAG CGGAAGGAAG
  GAAGCCTATG TACATCTAGC TGGTCCACCA GTCCAGGACA CAACCTCCTC CAGTGGCCAG
  TTTGTGCGCC CTGGGACTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45992785	mCV25139151	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss145882796	ENSMUSSNP885527	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31050974					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127399680 () rs orientation: forward

Symbol	Name	Function Class
9430064I24Rik	RIKEN cDNA 9430064I24 gene	within coordinates
Cpgi19768	CpG island 19768	1227 bp distal
Cpgi19769	CpG island 19769	1907 bp proximal
Gm49388	predicted gene, 49388	within coordinates
Hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	150 bp upstream
Rr655897	regulatory region 655897	within coordinates
Rr655898	regulatory region 655898	within coordinates
Rr655899	regulatory region 655899	1736 bp proximal
Setd1a	SET domain containing 1A	386 bp downstream
Tssr69292	transcription start site region 69292	100 bp upstream
Tssr69293	transcription start site region 69293	115 bp upstream
Tssr69294	transcription start site region 69294	203 bp upstream
Tssr69295	transcription start site region 69295	336 bp upstream