rs31051002 SNP Detail

Summary

• ID
  rs31051002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75237689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GGGTAGTCAC TGGTTTAAAG
  Y
  CAAGGAAAGT GCTGAGTCAC AGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45992125	mCV23922485	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss50415645	NES13934693	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T		T	T	T	T		C	T		T
ss145080924	ENSMUSSNP362598	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss322267522	CHEV_7_82732827	CHEVERUD	SCREENING_POP	f	SNP													C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31051002					SNP	T	C	C	C	C	C	T	C	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50415645	NES13934693	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75237689 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	within coordinates
Rr400375	regulatory region 400375	36 bp upstream
Rr649260	regulatory region 649260	within coordinates
Rr649261	regulatory region 649261	1305 bp proximal
Tssr67242	transcription start site region 67242	1753 bp downstream
Tssr67243	transcription start site region 67243	1721 bp downstream
Tssr67244	transcription start site region 67244	1706 bp downstream
Tssr67245	transcription start site region 67245	1669 bp downstream
Tssr67246	transcription start site region 67246	1637 bp downstream
Tssr67247	transcription start site region 67247	1608 bp downstream
Tssr67248	transcription start site region 67248	1565 bp downstream
Tssr67249	transcription start site region 67249	1529 bp downstream
Tssr67250	transcription start site region 67250	1493 bp downstream
Tssr73048	transcription start site region 73048	29 bp upstream