rs31051971 SNP Detail

Summary

• ID
  rs31051971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58410929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTCTAC ATCTTCATAT
  GCAGGCTGCT AGCAAAAGAC TGGCTTCCAG GCTGCTAGGA TGAGGGTATT AAAGTCCATG
  CCCATAGTGA CACACCTACT CCAACAAGGC TACACCTTCT AATAGTGCCA CTCCCTGGGC
  CAAACATACA ACCCATCACA ATCATCAAAG AGAGTCAGAA CAGGAACTCA AGCAGGTCTG
  R
  AATCTGGAGG CAAGAACAGA TGCAGAGGCC ATGGAGGGGG TGCTGCTTAC CGCCTTGCTC
  TCCTTGGCTT GCTTAGCCTG CTTTCTACAG AACAGAAGAC CACCAACCAG GGATGACACC
  ACAGTGGGTT AGGTTCTCCC CATTGATCAC TAATTGAGAA AATGCCTTAT AGCTGGATCT
  CATAAAGGTA TTTCCTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45493937	mCV25119272	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135206838	ENSMUSSNP4819641	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss320783057	CHEV_3_58307430	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31051971					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58410929 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	159 bp upstream
Rr375034	regulatory region 375034	521 bp upstream
Rr577237	regulatory region 577237	1281 bp distal
Rr577238	regulatory region 577238	411 bp proximal
Tssr29204	transcription start site region 29204	1323 bp downstream