rs31052051 SNP Detail

Summary

• ID
  rs31052051
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30827105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT TCAGGGCTTT TGCCCTACTT
  Y
  CATTCTGCCT GGACACCCCC CACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45992504	mCV24561317	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss148700238	ENSMUSSNP5230699	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31052051					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30827105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18837	CpG island 18837	35 bp distal
Rr645025	regulatory region 645025	847 bp distal
Rr645026	regulatory region 645026	187 bp distal
Rr645027	regulatory region 645027	814 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	677 bp upstream
Tssr71935	transcription start site region 71935	955 bp upstream
Tssr71936	transcription start site region 71936	908 bp upstream
Tssr71937	transcription start site region 71937	746 bp upstream
Tssr71938	transcription start site region 71938	688 bp upstream
Tssr71939	transcription start site region 71939	638 bp upstream
Tssr71940	transcription start site region 71940	503 bp upstream