rs31053289 SNP Detail

Summary

• ID
  rs31053289
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22532643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAAGAGAT CTCTGCCAAA AGCCCTGTCT GCAGGGTCTA
  GGAATTCCCA TTTCTCCTAC AAGAAGTCCA CTGACACAGC ACTGAATGAT AACAAACCCT
  W
  AAGTAAAAAA CAACAGCTTG GCCACCTATG TGAGGGCAGA GTGCTTTCCG TCGACCAAAG
  AGACAATTTT CTGACACAGG GGAGTGATCA TAATTATTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45993110	mCV23506702	ABI	CRAMUS_MOUSE	f	SNP		A					T
ss48354580	NES12250131	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	T		A	T	T		A	T	T		A
ss145303998	ENSMUSSNP6746800	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325324147	CHEV_17_22450629	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31053289					SNP	A	A	T	A	T	T	T	A	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48354580	NES12250131	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22532643 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	1260 bp upstream
Rr392409	regulatory region 392409	849 bp downstream
Rr523017	regulatory region 523017	598 bp proximal
Rr523018	regulatory region 523018	1165 bp proximal
Tssr146602	transcription start site region 146602	1132 bp downstream
Tssr146603	transcription start site region 146603	1152 bp downstream