rs31053519 SNP Detail

Summary

• ID
  rs31053519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34976803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA TCCAATTAAG TAGGTGCCAC
  R
  GGCATGGAGG CGTGCACCTG TCGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45991449	mCV23209378	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss148806148	ENSMUSSNP6330767	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31053519					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34976803 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18868	CpG island 18868	1705 bp distal
Gm73037	predicted gene, 73037	within coordinates
Gpatch1	G patch domain containing 1	within coordinates
Rr645354	regulatory region 645354	126 bp proximal
Rr645355	regulatory region 645355	1119 bp proximal
Tssr72028	transcription start site region 72028	1834 bp upstream
Tssr72029	transcription start site region 72029	1818 bp upstream
Wdr88	WD repeat domain 88	1845 bp upstream