rs31053520 SNP Detail

Summary

• ID
  rs31053520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCTTTT TAAAAATATT
  TGTTTGTTTA ATGTATGTAA GTATACTGTT GCTATCTTCA GACACACCAG AAGAGGGCAT
  CCAATCCCAT TACAGATGGT TGTGAGCCAC CATGTGGTTG CTGGGAATTG AACTCAGGAC
  CTCTGGACTA TTGGTATGTC TGAAGACAGC TACTGTGTAC TCATATAACA TAAATAAATC
  Y
  TTTAAAAAAC AAAAGAACAA GAACAAATCA GGAACAAGCA TATTTTCTGA AATTGGGCCT
  TGTGGTATAT GCCTATTAAT CCCAGTACCA GAGGGTTTGG AGCAGGAATA TTAGAAACTC
  ATCAGACACC ATTCTCTTAG CTATGTAATG AGTTGGAGGC CAGCCTCAGG TACATGAGAC
  CTATATCAAA ACAAACCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45991450	mCV25048169	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148469550	ENSMUSSNP279216	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31053520					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1525 bp distal
Cpgi18450	CpG island 18450	1575 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1702 bp upstream
Gm71808	predicted gene, 71808	1380 bp downstream
Rr155270	regulatory region 155270	1244 bp distal
Rr155271	regulatory region 155271	44 bp distal
Rr167137	regulatory region 167137	1443 bp distal
Rr167138	regulatory region 167138	756 bp proximal
Tssr64790	transcription start site region 64790	1697 bp upstream
Tssr64791	transcription start site region 64791	1727 bp upstream
Tssr64792	transcription start site region 64792	1764 bp upstream
Tssr64793	transcription start site region 64793	1794 bp upstream
Tssr64794	transcription start site region 64794	1929 bp upstream