rs31054234 SNP Detail

Summary

• ID
  rs31054234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:78963183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGAAAGAAAA AAACAGGAGG GATCCTAGAC AAGAAAGAAA TTCGATTAGA ATTTTGGCCA
  CAGTGGTAGG AGAGAAAAAA AAAAAAAAAA AAGACAGAAC CTAGACAGAT AGGGAACCTG
  AGAAACAGAA GACCAATGTG CTTAACAGAA TTAAGTAAGT TGGCGTACCG AGCCTCAGCT
  AAAAAGGCTC AGCTGTGTCA GACTGAAGTT ACTTATTTGG GATACACCTA CAAAAAGACT
  AGAATATGCC CAACCCACCT AAGAGCTAAA CATCTGCAGA GACAAGTTAG AACATCCCCC
  Y
  TATCATGTTC TGAGATTATC GAGAGTGGCT GACTTGGTCT TCAAACTTTG TATGCCTTGA
  CACCTGGTTA ATGCTAATCC TTCCAGAATG CCTCCTGAGA GAAGACTGAG GTAAAGCCAG
  CCAAGTATGG TAACAAGTAC TTATTAGTGT TTATAGACAT CTTTTCAAGC TGGGTAGAAG
  CTTTTCCTCC CATGACTAAA ATGGCCAATG TGATGGCCAA AATGATCCTA GAAGAAATCT
  TCCCAAGATT TGGGATACCA AAGGTAATCG GGTCTGATAA TAGACCTGCC TTTGTTGCCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss46473171	mCV24448800	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs31054234					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:78963183 () rs orientation: forward

Symbol	Name	Function Class
Rr395274	regulatory region 395274	237 bp upstream
Tssr163724	transcription start site region 163724	1093 bp upstream