rs31054337 SNP Detail

Summary

• ID
  rs31054337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75237117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACG TCGTTGCAGA CAGCTTTGCA
  R
  TGAGAGGTGC TGAGATGCAA CAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45991959	mCV23923080	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		G
ss50415651	NES13934690	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	G		G	G	G	G		A	G		G
ss145080906	ENSMUSSNP2081180	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss322267518	CHEV_7_82732255	CHEVERUD	SCREENING_POP	f	SNP													A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31054337					SNP	G	G	A	A	A	A	G	A	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50415651	NES13934690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75237117 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	within coordinates
Rr400375	regulatory region 400375	608 bp upstream
Rr649259	regulatory region 649259	1654 bp distal
Rr649260	regulatory region 649260	within coordinates
Rr649261	regulatory region 649261	1877 bp proximal
Tssr67241	transcription start site region 67241	1655 bp downstream
Tssr67242	transcription start site region 67242	1181 bp downstream
Tssr67243	transcription start site region 67243	1149 bp downstream
Tssr67244	transcription start site region 67244	1134 bp downstream
Tssr67245	transcription start site region 67245	1097 bp downstream
Tssr67246	transcription start site region 67246	1065 bp downstream
Tssr67247	transcription start site region 67247	1036 bp downstream
Tssr67248	transcription start site region 67248	993 bp downstream
Tssr67249	transcription start site region 67249	957 bp downstream
Tssr67250	transcription start site region 67250	921 bp downstream
Tssr73048	transcription start site region 73048	519 bp downstream