rs31056313 SNP Detail

Summary

• ID
  rs31056313
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30430457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTACATGAA GCGATGACTG GCACGAGGCT GGGTCTTGGG
  AGCAGAGGGA AGGAGCTACA GACACAGATC TTGGGGGCTG TAGCCCTTAG GAACACAGGG
  K
  GTTGGGGGTG GGTTGGCATT GGGGCTGATT TGATCTGACC CATTCAAATG ACATCTTGGC
  ATTTGAGAGT GGACCTGTAA AAGCCAAATG CCAGGGAAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45993056	mCV25318966	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss148686879	ENSMUSSNP833560	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss322136286	CHEV_7_31516051	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31056313					SNP	G	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30430457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	1020 bp distal
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	within coordinates
Rr400253	regulatory region 400253	1173 bp downstream
Rr644903	regulatory region 644903	1393 bp distal
Tmem147	transmembrane protein 147	1498 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	1389 bp downstream
Tssr65803	transcription start site region 65803	1273 bp downstream
Tssr65804	transcription start site region 65804	1226 bp downstream
Tssr65805	transcription start site region 65805	142 bp upstream
Tssr71843	transcription start site region 71843	1579 bp upstream
Tssr71844	transcription start site region 71844	1531 bp upstream
Tssr71845	transcription start site region 71845	1476 bp upstream