rs31056980 SNP Detail

Summary

• ID
  rs31056980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142201019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC AGTGGAACCC TGCGCTCACT
  Y
  GCAATGTAAG TTTTGGAGTC TTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47011844	NES10861865	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	T	C		C
ss321002333	CHEV_3_142158222	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31056980					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47011844	NES10861865	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142201019 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	1676 bp upstream
Rr398083	regulatory region 398083	1507 bp downstream
Rr398084	regulatory region 398084	1242 bp upstream
Rr586444	regulatory region 586444	1010 bp distal
Rr586445	regulatory region 586445	1616 bp distal
Rr586446	regulatory region 586446	1152 bp proximal
Rr586447	regulatory region 586447	1653 bp proximal
Tssr32047	transcription start site region 32047	1514 bp upstream
Tssr32048	transcription start site region 32048	1533 bp upstream
Tssr32049	transcription start site region 32049	1557 bp upstream
Tssr32050	transcription start site region 32050	1615 bp upstream
Tssr32051	transcription start site region 32051	1666 bp upstream