rs31057151 SNP Detail

Summary

• ID
  rs31057151
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12771416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCTGAG TCTTGGGCCA
  CGAGTCCCCA GTTTAAAACA CTAAACCGTC TCCCACTTAT TCCCAATTCG TAACCTTCAC
  AATCTTCACG ACACGGCACC CCAGAGCAAA GTTCTCGTCT GACTCTCAAA ACTATACCCC
  TCCCCTAACA GATTCCGCGT CCCTAACACT CCAGGCCCGA GTATCCCAAC GCCCCAATCT
  M
  TGACCCTCCC TAGTGACCGC ACCCCCAGTC CCGCATCACA ACCCTCGAAA CCTGACCACC
  AATACCAAAT ATCAGGGGCC GCATTTTCTC GCCACGGTCC CTGACCTCGA ACGCAGGGTC
  CCGACCCCTA CCCTTCTGAA TCCGGAGCTG CGCCGCCGAC GCCTTCTTGC TGCTGCCCTT
  GGTGCCGCCG GCCGACTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45993493	mCV23259846	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss322107207	CHEV_7_13622838	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31057151					SNP	A	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12771416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	within coordinates
Gm71833	predicted gene, 71833	489 bp upstream
Rr400106	regulatory region 400106	724 bp upstream
Rr642445	regulatory region 642445	within coordinates
Rr642446	regulatory region 642446	156 bp proximal
Rr642447	regulatory region 642447	500 bp proximal
Rr642448	regulatory region 642448	774 bp proximal
Tssr64535	transcription start site region 64535	185 bp upstream
Tssr64536	transcription start site region 64536	507 bp upstream
Tssr70650	transcription start site region 70650	1954 bp upstream
Tssr70651	transcription start site region 70651	827 bp upstream
Tssr70652	transcription start site region 70652	170 bp downstream
Tssr70653	transcription start site region 70653	195 bp downstream
Tssr70654	transcription start site region 70654	332 bp downstream
Tssr70655	transcription start site region 70655	344 bp downstream
Tssr70656	transcription start site region 70656	473 bp downstream
Tssr70657	transcription start site region 70657	712 bp downstream
Tssr70658	transcription start site region 70658	822 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	within coordinates