rs31057242 SNP Detail

Summary

• ID
  rs31057242
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127078010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGCCAG AGTCCTGTAG
  TGTGCCACAG GACACATCAA GTGAATAGCA GACTTAGAAG ACTGAATGCA ACACAGTCTT
  CTCCATAAGC AACATTCACT CAAAACTGTG ATGCCTACCC CACTAACTAG AGCACTCCTT
  ATTCTTCAAG TGATTTTTTT TTCATTTGAT ATTTCAAAAA TCTGAAATGC GGGTAATGTG
  M
  AGCTGTGAAA TTCCTCCAAA GCAAGCAATC TGATGATGTC TTCCATAAAA ACGTCTCCAG
  CAAGCCACTT GCCATCCATC ACGTGGAATG AAGGGCACCT GAGATGTGCG AACGGCTCTC
  TGAATGGAAC CAACAAGAGA ATGCTTCCCC AGAGTCAAGT CACTTCTGAG CATCTTGTCC
  CTCAACTAAG ATCCCCGACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45494768	mCV24304475	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss135859311	ENSMUSSNP3030069	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss320952638	CHEV_3_126987279	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31057242					SNP	A	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127078010 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	Intron
Gm42971	predicted gene 42971	within coordinates
Tssr35568	transcription start site region 35568	1977 bp upstream
Tssr35569	transcription start site region 35569	1960 bp upstream
Tssr35570	transcription start site region 35570	1886 bp upstream