rs31057454 SNP Detail

Summary

• ID
  rs31057454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTGAGTAC TACAGACAGA CTTGTGTGCC AAGTGTGATT
  CTGTTTTCTC CTTTTTTTTT TTTTTTTTTT TGCATCGGTG ATGGAACACA CTGTAGGAAA
  R
  AAAAAAAGTC TCAATCTGCA AGATGTGGCG GGGTGATAAC TGCAGAAAGT TCGGGGGGAT
  CTGGGAAATT CCTCAGCTCA GCTGAGGTCA CAAATTCTGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47012424	NES10859330	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31057454					SNP	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012424	NES10859330	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266143 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	within coordinates
Rr586453	regulatory region 586453	within coordinates
Rr586454	regulatory region 586454	40 bp proximal
Rr586455	regulatory region 586455	447 bp proximal
Tssr32157	transcription start site region 32157	277 bp downstream
Tssr32158	transcription start site region 32158	248 bp downstream
Tssr32159	transcription start site region 32159	216 bp downstream
Tssr32160	transcription start site region 32160	168 bp downstream
Tssr32161	transcription start site region 32161	28 bp downstream
Tssr32162	transcription start site region 32162	156 bp upstream
Tssr32163	transcription start site region 32163	190 bp upstream
Tssr32164	transcription start site region 32164	223 bp upstream
Tssr32165	transcription start site region 32165	239 bp upstream
Tssr32166	transcription start site region 32166	575 bp upstream
Tssr32167	transcription start site region 32167	1302 bp upstream