rs31057456 SNP Detail

Summary

• ID
  rs31057456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAATCT GCAAGATGTG
  GCGGGGTGAT AACTGCAGAA AGTTCGGGGG GATCTGGGAA ATTCCTCAGC TCAGCTGAGG
  TCACAAATTC TGTTATTTTG TTCAAGCCCT CAACGACTGA CTGAGTCATC AAGCAAGGAG
  CATGGTTTCG ATTTCAGTTC CTTTTATCTC AATTTGTGTT TGGGCGGCTG TTACTTTGCC
  R
  CTTCTAACAG TGGCTGCTCC AAGGAGCCTG GAGCAGTAGG AAGCTCAGGG AAAGAACTAA
  GTTGGCTGAG GACTGTCCCT GTTACAGAGC CAGTGCCTGG GTGAGTAACC ACATGTGTTT
  CTCTCAACAG ACGCTGCCGG CGAAATTGCC AGGACATCTC CATTCTGGGG TGGCAGACTC
  ACCCTGGTGG GCAAGCCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45515020	mCV23580111	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss47012426	NES10859331	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G	A	G		G	A	G	G		G
ss136014997	ENSMUSSNP4892428	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss321002897	CHEV_3_142223554	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31057456					SNP	G	G	G	A	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012426	NES10859331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266351 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	within coordinates
Rr586453	regulatory region 586453	169 bp distal
Rr586454	regulatory region 586454	within coordinates
Rr586455	regulatory region 586455	239 bp proximal
Tssr32157	transcription start site region 32157	485 bp downstream
Tssr32158	transcription start site region 32158	456 bp downstream
Tssr32159	transcription start site region 32159	424 bp downstream
Tssr32160	transcription start site region 32160	376 bp downstream
Tssr32161	transcription start site region 32161	236 bp downstream
Tssr32162	transcription start site region 32162	21 bp downstream
Tssr32163	transcription start site region 32163	within coordinates
Tssr32164	transcription start site region 32164	15 bp upstream
Tssr32165	transcription start site region 32165	31 bp upstream
Tssr32166	transcription start site region 32166	367 bp upstream
Tssr32167	transcription start site region 32167	1094 bp upstream