rs31057458 SNP Detail

Summary

• ID
  rs31057458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGATCTGG GAAATTCCTC
  AGCTCAGCTG AGGTCACAAA TTCTGTTATT TTGTTCAAGC CCTCAACGAC TGACTGAGTC
  ATCAAGCAAG GAGCATGGTT TCGATTTCAG TTCCTTTTAT CTCAATTTGT GTTTGGGCGG
  CTGTTACTTT GCCACTTCTA ACAGTGGCTG CTCCAAGGAG CCTGGAGCAG TAGGAAGCTC
  R
  GGGAAAGAAC TAAGTTGGCT GAGGACTGTC CCTGTTACAG AGCCAGTGCC TGGGTGAGTA
  ACCACATGTG TTTCTCTCAA CAGACGCTGC CGGCGAAATT GCCAGGACAT CTCCATTCTG
  GGGTGGCAGA CTCACCCTGG TGGGCAAGCC AGTGCAAGCT GCAGACCTCA CAGGGTCTTG
  TGGCCATTTG CAGAGCGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47012428	NES10859332	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31057458					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012428	NES10859332	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266398 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	26 bp downstream
Rr586453	regulatory region 586453	216 bp distal
Rr586454	regulatory region 586454	within coordinates
Rr586455	regulatory region 586455	192 bp proximal
Tssr32157	transcription start site region 32157	532 bp downstream
Tssr32158	transcription start site region 32158	503 bp downstream
Tssr32159	transcription start site region 32159	471 bp downstream
Tssr32160	transcription start site region 32160	423 bp downstream
Tssr32161	transcription start site region 32161	283 bp downstream
Tssr32162	transcription start site region 32162	68 bp downstream
Tssr32163	transcription start site region 32163	35 bp downstream
Tssr32164	transcription start site region 32164	21 bp downstream
Tssr32165	transcription start site region 32165	9 bp downstream
Tssr32166	transcription start site region 32166	320 bp upstream
Tssr32167	transcription start site region 32167	1047 bp upstream