rs31057462 SNP Detail

Summary

• ID
  rs31057462
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGT GCCTGGGTGA GTAACCACAT
  K
  TGTTTCTCTC AACAGACGCT GCCGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss47012432	NES10859334	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G		T	T
ss321002898	CHEV_3_142223669	CHEVERUD	SCREENING_POP	f	SNP								T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs31057462					SNP	G	G	G	G	T	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012432	NES10859334	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266466 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	94 bp downstream
Rr586453	regulatory region 586453	284 bp distal
Rr586454	regulatory region 586454	within coordinates
Rr586455	regulatory region 586455	124 bp proximal
Tssr32157	transcription start site region 32157	600 bp downstream
Tssr32158	transcription start site region 32158	571 bp downstream
Tssr32159	transcription start site region 32159	539 bp downstream
Tssr32160	transcription start site region 32160	491 bp downstream
Tssr32161	transcription start site region 32161	351 bp downstream
Tssr32162	transcription start site region 32162	136 bp downstream
Tssr32163	transcription start site region 32163	103 bp downstream
Tssr32164	transcription start site region 32164	89 bp downstream
Tssr32165	transcription start site region 32165	77 bp downstream
Tssr32166	transcription start site region 32166	252 bp upstream
Tssr32167	transcription start site region 32167	979 bp upstream